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Search Results: Records 1-9 displayed on this page of 9
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Oral presentation

Prediction of transcription factors and their targets; Application to yeast genome

Sarai, Akinori*; Ueno, Takuya*; Ngahu, A.*; Ahmad, S.*; Kono, Hidetoshi

no journal, , 

no abstracts in English

Oral presentation

Indirect readout by DNA binding proteins; Analysis of sequence dependent conformation by molecular dynamics simulation

Fujii, Satoshi*; Ara$'u$zo-Bravo, M. J.*; Takenaka, Shigeori*; Kono, Hidetoshi; Go, Nobuhiro; Sarai, Akinori*

no journal, , 

no abstracts in English

Oral presentation

X-ray crystallographic analysis of the Fab derived from antigenase ($$alpha$$HA1-2mAb Fab) with antigen peptide

Arai, Shigeki; Tamada, Taro; Okamoto, Yoshiko*; Hifumi, Megumi*; Uda, Taizo*; Kuroki, Ryota

no journal, , 

no abstracts in English

Oral presentation

Ultrahigh-resolution X-ray and neutron structural analysis of the complex of elastase with lead compound to drug

Tamada, Taro; Kinoshita, Takayoshi*; Kuroki, Ryota; Tada, Toshiji*

no journal, , 

no abstracts in English

Oral presentation

Analyses on interactions of DNA with the novel DNA repairing protein of PprA derived from Deinococcus radiodurans

Adachi, Motoyasu; Tamada, Taro; Sato, Katsuya; Yura, Kei; Narumi, Issei; Kuroki, Ryota

no journal, , 

Deinococcus radiodurans exhibits 1000 times higher radiation resistance than human cells. PprA is cloned from the bacteria and the novel DNA repair protein that plays an important role in the resistance. This study is aimed to reveal the structure function relationship of PprA. The recombinant PprA protein was purified from E. coli. The interactions of PprA with DNA were analyzed by gel shift assay and gel filtration. The results showed that (1) at least 280 molecules of PprA can bound to a DNA molecule of pUC19 composed of 2686bp (2) the formation the complex of PprA and DNA depends on Mg, Ca and Sr ions at low concentration (3) the formation the complex of PprA and DNA depends on the concentration of the salt at the range of 0 to 0.4M sodium acetate. In addition, the result indicated that the complexes of PprA and DNA can form larger complex depending on the concentration of PprA molecule, when using linear double stranded DNA. This suggests that PprA may locate two terminals of a DNA molecule damaged by radiation at near distance for DNA repairing.

Oral presentation

Expression and preparation of the extra cellular region of receptors

Kuroki, Ryota; Honjo, Eijiro; Tamada, Taro

no journal, , 

Silk worm expresssion system is the rapid system for several protein expressions developed by Katakura Industries company. We have used this system for test expression of the extracellular region of receptors. Every cDNA coding extracellular region of receptors were fused to the cDNA of Fc region of antibody, and cloned into the transfer vector and the vector was transformed into vacuro virus that can infect silk worm. So far, expression of 10 extracellular regions of menbrane proteins were tested using this system, all proteins were successfully expressed. Among these proteins, interleukin-13 receptor alpha 1 and 2, interluekin-4 receptor were purified from the silk worm and their functions were comfirmed.

Oral presentation

Characteristics of subunit interactions in biological supramolecules

Yura, Kei

no journal, , 

no abstracts in English

Oral presentation

Analyses in interaction between DNA and PprA of the novel DNA repair protein derived from Deinococcus radiodurans

Adachi, Motoyasu; Tamada, Taro; Sato, Katsuya; Yura, Kei; Narumi, Issei; Kuroki, Ryota

no journal, , 

no abstracts in English

Oral presentation

Stabilization of protein crystal by inter-molecular disulfide bridges

Honjo, Eijiro; Tamada, Taro; Ikura, Teikichi*; Kuroki, Ryota

no journal, , 

no abstracts in English

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